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(Construction details)
 
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Note that the EGFP sequence is followed by 60 bp of polylinker sequence from pCS2+ before the stop codon. We have confirmed functionally that this cassette produces fluorescent protein in C-terminal fusion constructs. Sequencing confirms that all bases of the insert are correct.
 
Note that the EGFP sequence is followed by 60 bp of polylinker sequence from pCS2+ before the stop codon. We have confirmed functionally that this cassette produces fluorescent protein in C-terminal fusion constructs. Sequencing confirms that all bases of the insert are correct.
  
=== Crudely annotated sequence ===
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The EGFP sequence '''does''' include a start codon and a good Kozak consensus, so it is possible to use this clone to test promoters cloned into a middle clone.
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=== Sequence ===
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Annotated sequence, Genbank format:<br>
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[[p3E-EGFPpA Genbank]]
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FASTA file with the full-length sequence as well as sequences of individual components:<br>
 
FASTA file with the full-length sequence as well as sequences of individual components:<br>
 
[[p3E-EGFPpA sequence]]
 
[[p3E-EGFPpA sequence]]

Latest revision as of 03:52, 19 December 2007

Construction details

p3E-EGFPpA was made by PCR amplification of EGFP and an SV40 late polyadenylation signal from a pCS2+-based plasmid, using primers to add att sites, followed by a BP reaction.

Note that the EGFP sequence is followed by 60 bp of polylinker sequence from pCS2+ before the stop codon. We have confirmed functionally that this cassette produces fluorescent protein in C-terminal fusion constructs. Sequencing confirms that all bases of the insert are correct.

The EGFP sequence does include a start codon and a good Kozak consensus, so it is possible to use this clone to test promoters cloned into a middle clone.

Sequence

Annotated sequence, Genbank format:
p3E-EGFPpA Genbank

FASTA file with the full-length sequence as well as sequences of individual components:
p3E-EGFPpA sequence

Crude map

Screenshot from Sequencher showing locations of components:
P3E-EGFPpA.png