From Tol2Kit
Revision as of 03:53, 6 November 2007 by Chi-bin (talk | contribs) (New page: Below are insert sequences for all entry clones, and 5' and 3' end sequences for all destination clones. In all cases, we have included sequence up through the appropriate "att shared" seq...)
Below are insert sequences for all entry clones, and 5' and 3' end sequences for all destination clones. In all cases, we have included sequence up through the appropriate "att shared" sequence--the core sequence that is shared between attL,R,B, and P sites.
These core sequences will overlap between adjacent components of an expression clone, and this overlap can be used to assemble a predicted contig for the expression clone, either by hand, or using a program such as Sequencher (be sure to set "minimum overlap" to 15 or less in Assembly Parameters).
As an example, here is what the predicted sequence for pDestTol2CG2;bactin:mCherry-IRES-EGFPpA would look like:
<395.pDestTol2CG2 5' thru attR4 shared>
CCACCTAAATTGTAAGCGTTAATATTTTG...CAAGCTATCAACTTTGTATAGAAAAGTTG
CAACTTTGTATAGAAAAGTTGAAAATTCCAGTTTGAA...CAGCCTCAAGTTTGTACAAAAAAG
<299.p5E_bactin2_insert> TTTGTACAAAAAAGCAGGCTCCACCATGGT...
<386.pME-mCherry_insert>
